PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06287.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 290aa    MW: 33413.1 Da    PI: 8.53
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06287.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.8e-5381411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrFhPtdeel+ +yL+k++++++l++ ++i+evdiyk++Pw+Lp k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++s+     
  PK06287.1   8 LPPGFRFHPTDEELILHYLRKRINSTPLPV-SIIAEVDIYKFDPWQLPDKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIISSslcss 106
                79****************************.89***************8777899***************************************989888 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++g+kk Lvfykgr pkg+kt+W+mheyrl
  PK06287.1 107 ssYHQNIGVKKALVFYKGRPPKGVKTNWIMHEYRL 141
                776677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-645177IPR003441NAC domain
PROSITE profilePS5100560.9358177IPR003441NAC domain
PfamPF023651.7E-279141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKNPQSNLPP GFRFHPTDEE LILHYLRKRI NSTPLPVSII AEVDIYKFDP WQLPDKALFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIIS SSLCSSSSYH QNIGVKKALV  120
FYKGRPPKGV KTNWIMHEYR LAESPTYAYN SKLNNINKVK DSSMRLDDWV LCRIYKKTNV  180
VQQQHHQTTT TMASDYLNHH HQEEEEEQQQ QFIQEALLSS SSPSCLKGDQ EKYYSIIKPQ  240
KSSSFSNLLD YSILSSLLSD CPNNNNSSSI GFVVNDDYDN NHYNNSMISX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-74518314171NO APICAL MERISTEM PROTEIN
1ut4_B4e-74518314171NO APICAL MERISTEM PROTEIN
1ut7_A4e-74518314171NO APICAL MERISTEM PROTEIN
1ut7_B4e-74518314171NO APICAL MERISTEM PROTEIN
4dul_A4e-74518314171NAC domain-containing protein 19
4dul_B4e-74518314171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088481.11e-127NAC domain-containing protein 29
SwissprotA0SPJ92e-87NAM2_HORVD; NAC transcription factor NAM-2
TrEMBLW9QFW11e-127W9QFW1_9R
STRINGPOPTR_0019s04690.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-91NAC domain containing protein 47